Pontificia Universidad Católica de Chile Pontificia Universidad Católica de Chile
C. Milovic, C. Oses, M. Villalon, S. Uribe, C. Lizama, C. Prieto, M. E. Andia, P. Irarrazaval, C. Tejos.Calcium (Ca2+) waves data calibration and analysis using image processing techniques. BMC Bioinformatics, 14:62, 2013. (2013)

Calcium (Ca2+) waves data calibration and analysis using image processing techniques

Revista : BMC Bioinformatics
Volumen : 14
Número : 162
Tipo de publicación : Publicaciones WOS sin afiliación UC Ir a publicación


BackgroundCalcium (Ca2+) propagates within tissues serving as an important information carrier. In particular, cilia beat frequency in oviduct cells is partially regulated by Ca2+ changes. Thus, measuring the calcium density and characterizing the traveling wave plays a key role in understanding biological phenomena. However, current methods to measure propagation velocities and other wave characteristics involve several manual or time-consuming procedures. This limits the amount of information that can be extracted, and the statistical quality of the analysis.ResultsOur work provides a framework based on image processing procedures that enables a fast, automatic and robust characterization of data from two-filter fluorescence Ca2+ experiments. We calculate the mean velocity of the wave-front, and use theoretical models to extract meaningful parameters like wave amplitude, decay rate and time of excitation.ConclusionsMeasurements done by different operators showed a high degree of reproducibility. This framework is also extended to a single filter fluorescence experiments, allowing higher sampling rates, and thus an increased accuracy in velocity measurements.